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Data from a specific source can be selected using the SOURCE variable. Sourcesĭata sources in this repository were selected to provide comprehensive spatiotemporal data for each outbreak. If additional cities in the Beijing municipality reported data, those data would be aggregated with the city Beijing data to form the municipality Beijing data. Thus, the 2019-nCoV dataset includes rows of data for both the city Beijing, as well as the municipality of the same name. For example, the data for the 2019-nCoV from one source provides information for the city of Beijing, which Google Geolocations indicates is a “locality.” Beijing is also the name of the municipality where the city Beijing is located. Administrative levels in this dataset are defined using the Google Geolocation API ( ). There are differences in administrative division naming practices by country. For example, subset the data to SPATIAL_RESOLUTION equal to “AL0” in order to view only the aggregated country level data. Users should avoid summing all cases or deaths in a given country for a given date without specifying the SPATIAL_RESOLUTION value. For example, if a source only provides data at the province-level, then province-level data are included in the dataset as well as country-level totals. We also aggregate incidence to coarser geographic resolutions. Information is included at the finest spatial resolution provided to the original epidemic report. Data should be subset to a single spatial resolution of interest using the SPATIAL_RESOLUTION variable. Spatial Resolutionĭata are provided at multiple spatial resolutions. It should be noted that deaths are included in case counts. Subset the data to either CASE or DEATH using the OUTCOME variable. The incidence datasets include cases and deaths. The data provided under the "Metabiota Composite Source" often does not include suspected incidence due to inconsistencies in reporting cases and deaths with this confirmation status. If the report does not specify confirmation status, the value is included in the "total" confirmation status value. If a source only provides suspected, probable, or confirmed incidence, the total incidence is inferred to be the sum of the provided values. Total incidence values include confirmed, suspected, and probable incidence values. Subset the data by the CONFIRMATION_STATUS variable to either TOTAL, CONFIRMED, SUSPECTED, or PROBABLE to obtain the data of your choice. The incidence datasets include the confirmation status of cases and deaths when this information is provided by the reporting source. Use the CUMULATIVE FLAG variable to subset the data to cumulative (TRUE) or non-cumulative (FALSE) values. If the source only provides a non-cumulative incidence value, the cumulative values are inferred using prior reports from the same source. Reporting sources provide either cumulative incidence, non-cumulative incidence, or both. Please contact us if you are interested in licensing the complete dataset. Metabiota maintains a database of epidemiological information for over two thousand high-priority infectious disease events. Data will be updated periodically with the latest epidemiological data. This repository is intended to provide a single access point for data from a wide range of data sources. Data are collected at the time of publication in the highest geographic and temporal resolutions available in the original report.
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The data are cleaned and provided in a uniform format such that information can be compared across multiple sources. The data structuring process is designed to produce the most reliable estimates of reported cases and deaths over space and time.
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To select a single time series of case or death data, filter the incidence dataset by source, spatial resolution, location, confirmation status, and cumulative flag.ĭata are collected, structured, and validated by Metabiota’s digital surveillance experts. The file contains data from multiple sources at multiple spatial resolutions in cumulative and non-cumulative formats by confirmation status. One row in an incidence file contains a piece of epidemiological data extracted from the specified source. The incidence data are in a CSV file format. If there is a need for commercial use of the data, please contact Metabiota at to obtain a commercial use license. You may not use this data for commercial purposes. This repository contains spatiotemporal data from many official sources for 2019-Novel Coronavirus beginning 2019 in Hubei, China ("nCoV_2019")